Merge pull request #168 from ModelOriented/update-code-cov

Update code coverage version

Author: mayer79

.github/workflows/test-coverage.yaml

@@ -4,9 +4,10 @@ on:
   push:
     branches: [main, master]
   pull_request:
-    branches: [main, master]
 
-name: test-coverage
+name: test-coverage.yaml
+
+permissions: read-all
 
 jobs:
   test-coverage:
@@ -15,23 +16,23 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-r@v2
         with:
           use-public-rspm: true
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          extra-packages: any::covr
+          extra-packages: any::covr, any::xml2
           needs: coverage
 
       - name: Test coverage
         run: |
-          covr::codecov(
+          cov <- covr::package_coverage(
             quiet = FALSE,
             clean = FALSE,
-            install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package"),
+            install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package"),
             function_exclusions = c(
               "shapviz\\.lgb.Booster",
               "shapviz\\.explain",
@@ -44,18 +45,29 @@ jobs:
               "\\.onLoad"
             )
           )
+          print(cov)
+          covr::to_cobertura(cov)
         shell: Rscript {0}
 
+      - uses: codecov/codecov-action@v5
+        with:
+          # Fail if error if not on PR, or if on PR and token is given
+          fail_ci_if_error: ${{ github.event_name != 'pull_request' || secrets.CODECOV_TOKEN }}
+          files: ./cobertura.xml
+          plugins: noop
+          disable_search: true
+          token: ${{ secrets.CODECOV_TOKEN }}
+
       - name: Show testthat output
         if: always()
         run: |
           ## --------------------------------------------------------------------
-          find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
+          find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
         shell: bash
 
       - name: Upload test results
         if: failure()
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: coverage-test-failures
           path: ${{ runner.temp }}/package

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: shapviz
 Title: SHAP Visualizations
-Version: 0.9.7
+Version: 0.9.8
 Authors@R: c(
     person("Michael", "Mayer", , "[email protected]", role = c("aut", "cre")),
     person("Adrian", "Stando", , "[email protected]", role = "ctb")

NEWS.md

@@ -1,3 +1,9 @@
+# shapviz 0.9.8
+
+### Maintenance
+
+- Update code coverage version [#168](https://github.com/ModelOriented/shapviz/pull/168).
+
 # shapviz 0.9.7
 
 ### Documentation

README.md

@@ -3,7 +3,7 @@
 <!-- badges: start -->
 
 [![R-CMD-check](https://github.com/ModelOriented/shapviz/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/ModelOriented/shapviz/actions/workflows/R-CMD-check.yaml)
-[![Codecov test coverage](https://codecov.io/gh/ModelOriented/shapviz/graph/badge.svg)](https://app.codecov.io/gh/ModelOriented/shapviz?branch=main)
+[![Codecov test coverage](https://codecov.io/gh/ModelOriented/shapviz/graph/badge.svg)](https://app.codecov.io/gh/ModelOriented/shapviz)
 [![CRAN_Status_Badge](https://www.r-pkg.org/badges/version/shapviz)](https://cran.r-project.org/package=shapviz)
 
 [![](https://cranlogs.r-pkg.org/badges/shapviz)](https://cran.r-project.org/package=shapviz) 

packaging.R

@@ -1,6 +1,6 @@
-#=============================================================================
+# =============================================================================
 # Put together the package
-#=============================================================================
+# =============================================================================
 
 # WORKFLOW: UPDATE EXISTING PACKAGE
 # 1) Modify package content and documentation.
@@ -15,7 +15,7 @@ library(usethis)
 use_description(
   fields = list(
     Title = "SHAP Visualizations",
-    Version = "0.9.7",
+    Version = "0.9.8",
     Description = "Visualizations for SHAP (SHapley Additive exPlanations),
     such as waterfall plots, force plots, various types of importance plots,
     dependence plots, and interaction plots.
@@ -28,7 +28,7 @@ use_description(
     that requires numerical features. The plots are inspired by those provided by
     the 'shap' package in Python, but there is no dependency on it.",
     `Authors@R` =
-    "c(person('Michael', family = 'Mayer', role = c('aut', 'cre'), email = '[email protected]'),
+      "c(person('Michael', family = 'Mayer', role = c('aut', 'cre'), email = '[email protected]'),
        person('Adrian', family = 'Stando', role = 'ctb', email = '[email protected]'))",
     Depends = "R (>= 3.6.0)"
   ),
@@ -92,9 +92,9 @@ use_github_links(overwrite = TRUE) # use this if this project is on github
 # Revdep
 use_revdep()
 
-#=============================================================================
+# =============================================================================
 # Finish package building (can use fresh session)
-#=============================================================================
+# =============================================================================
 
 library(devtools)