diff --git a/models/pathology_tumor_detection/configs/metadata.json b/models/pathology_tumor_detection/configs/metadata.json index 306c8b65..9729c341 100644 --- a/models/pathology_tumor_detection/configs/metadata.json +++ b/models/pathology_tumor_detection/configs/metadata.json @@ -1,7 +1,8 @@ { "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json", - "version": "0.5.7", + "version": "0.5.8", "changelog": { + "0.5.8": "update readme to add memory warning", "0.5.7": "update channel_def in metadata", "0.5.6": "fix the wrong GPU index issue of multi-node", "0.5.5": "modify mgpu logging level", diff --git a/models/pathology_tumor_detection/docs/README.md b/models/pathology_tumor_detection/docs/README.md index 68ab4a9d..46cc761a 100644 --- a/models/pathology_tumor_detection/docs/README.md +++ b/models/pathology_tumor_detection/docs/README.md @@ -62,6 +62,10 @@ The training pipeline is a json file (dataset.json) which includes path to each A probability number of the input patch being tumor or normal. +### Memory Consumption Warning + +If you face memory issues in traning, you can lower the `batch_size` in the configurations to reduce the System RAM requirements. + ### Inference on a WSI Inference is performed on WSI in a sliding window manner with specified stride. A foreground mask is needed to specify the region where the inference will be performed on, given that background region which contains no tissue at all can occupy a significant portion of a WSI. Output of the inference pipeline is a probability map of size 1/stride of original WSI size.