Open
Description
Describe the bug
After an update to Fedora Atomic 42, I cannot execute any operation like update, install or uninstall package when I have layered packages.
Reproduction steps
- Update to Fedora 42 with layered packages
- Try to execute any operation like install/uninstall/update
Expected behavior
The operation should complete
Actual behavior
jsierzega /var/home/jsierzega 1 rpm-ostree update --uninstall nwg-shell
2 metadata, 0 content objects fetched; 788 B transferred in 4 seconds; 0 bajtów content written
Checking out tree b3b1c7a... done
Enabled rpm-md repositories: fedora-cisco-openh264 updates fedora updates-archive
Importing rpm-md... done
rpm-md repo 'fedora-cisco-openh264' (cached); generated: 2024-08-21T16:04:02Z solvables: 3
rpm-md repo 'updates' (cached); generated: 2025-04-16T03:02:59Z solvables: 4111
rpm-md repo 'fedora' (cached); generated: 2025-04-11T05:17:07Z solvables: 76879
rpm-md repo 'updates-archive' (cached); generated: 2025-04-16T03:49:34Z solvables: 3193
Resolving dependencies... done
Applying 2 overrides and 746 overlays
Processing packages... done
Running systemd-sysusers... done
Running pre scripts... done
Running post scripts... done
error: While applying overrides for pkg systemtap-runtime: Could not find group 'stapusr' in group file
The entries related to this package that I found in the logs shown by jornalctl -u rpm-ostreed:
kwi 16 16:37:18 NBJSIERZEGA rpm-ostree(systemtap-runtime.prein)[46153]: Creating group 'stapusr' with GID 156.
kwi 16 16:37:18 NBJSIERZEGA rpm-ostree(systemtap-runtime.prein)[46153]: Creating group 'stapsys' with GID 157.
kwi 16 16:37:18 NBJSIERZEGA rpm-ostree(systemtap-runtime.prein)[46153]: Creating group 'stapdev' with GID 158.
kwi 16 16:37:18 NBJSIERZEGA rpm-ostree(systemtap-runtime.prein)[46153]: Creating group 'stapunpriv' with GID 159.
kwi 16 16:37:18 NBJSIERZEGA rpm-ostree(systemtap-runtime.prein)[46153]: Creating user 'stapunpriv' (systemtap unprivileged user) with UID 159 and GID 159.
(...)
kwi 16 14:03:02 NBJSIERZEGA rpm-ostree(initscripts.post)[28527]: Created symlink '/etc/systemd/system/sysinit.target.wants/import-state.service' → '/usr/lib/systemd/system/import-state.service'.
kwi 16 14:03:02 NBJSIERZEGA rpm-ostree[26144]: Executed %post for initscripts in 186 ms
kwi 16 14:03:02 NBJSIERZEGA rpm-ostree[26144]: Executed %post for zfs-fuse in 180 ms
kwi 16 14:03:02 NBJSIERZEGA rpm-ostree[26144]: Txn UpdateDeployment on /org/projectatomic/rpmostree1/fedora failed: While applying overrides for pkg systemtap-runtime: Could not find group 'stapusr' in group file
System details
root /var/home/jsierzega 1 rpm-ostree --version
rpm-ostree:
Version: '2025.7'
Git: 35baf331666e4257c82bd33dbdcb24bfa00a0a90
Features:
- rust
- compose
- container
- fedora-integration
The issue is also present with version 2025.6
root /var/home/jsierzega rpm-ostree status -b
State: idle
BootedDeployment:
● fedora:fedora/42/x86_64/sericea
Version: 42.20250416.0 (2025-04-16T02:46:40Z)
BaseCommit: b3b1c7aa72c12f3e069a97425d198dd4583d6354987de2d2ee758c0a06e6517f
GPGSignature: Valid signature by B0F4950458F69E1150C6C5EDC8AC4916105EF944
RemovedBasePackages: noopenh264 2.5.0-2.fc42 toolbox 0.1.1-3.fc42
LayeredPackages: android-file-transfer android-tools ansible bat bats chromium clipman cloud-utils cmake cosmic-session
diffstat distrobox dnf doxygen edk2-ovmf fastfetch gettext git git-credential-libsecret glab gparted hdparm
htop hyprland kcat kubernetes langpacks-pl libffi-devel libnsl libvirt lxterminal maven meson moby-engine
mousepad mozilla-openh264 ncdu ngrep nmap nnn nodejs npm nwg-shell openssl p7zip pamixer patch patchutils pip
podman-compose postgresql python-sphinx python-sphinx_rtd_theme python3-bcc python3-devel python3-pip
python3-wxpython4 qemu ranger rdesktop remmina ruqola strace subversion swtpm swtpm-tools syslinux tcpdump
tcptrack thefuck thunderbird tmux traceroute virt-manager w3m xorriso yq yum-utils
Initramfs: regenerate
Unlocked: development
Additional information
No response