Merge pull request #645 from stan-dev/rtools42

RTools42 support

Author: rok-cesnovar

.github/workflows/R-CMD-check.yaml

@@ -25,7 +25,7 @@ jobs:
         config:
           - {os: macOS-latest, r: 'devel'}
           - {os: macOS-latest, r: 'release'}
-          # - {os: windows-latest, r: 'devel'}
+          - {os: windows-latest, r: 'devel'}
           - {os: windows-latest, r: 'release'}
           - {os: windows-latest, r: 'oldrel'}
           - {os: ubuntu-20.04, r: 'devel'}
@@ -49,31 +49,24 @@ jobs:
 
       - uses: actions/checkout@v2
 
-      - name: Set path for RTools 4.0
-        if: runner.os == 'Windows'
-        run: echo "C:/rtools40/usr/bin;C:/rtools40/mingw64/bin" | Out-File -Append -FilePath $env:GITHUB_PATH -Encoding utf8
-
-      - name: Install mingw32-make and check toolchain path
-        if: runner.os == 'Windows'
-        run: |
-          pacman -Syu mingw-w64-x86_64-make --noconfirm
-          g++ --version
-          Get-Command g++ | Select-Object -ExpandProperty Definition
-          mingw32-make --version
-          Get-Command mingw32-make | Select-Object -ExpandProperty Definition
-        shell: powershell
-
       - name: Install system dependencies
         if: runner.os == 'Linux'
         run: |
           sudo apt-get update
           sudo apt-get install -y libcurl4-openssl-dev || true
           sudo apt-get install -y openmpi-bin openmpi-common libopenmpi-dev || true
 
-      - uses: r-lib/actions/setup-r@v1
+      - uses: r-lib/actions/setup-r@v2
         with:
           r-version: ${{ matrix.config.r }}
-
+      - name: Install Rtools42
+        if: runner.os == 'Windows'
+        run: |
+          $source = 'https://cran.r-project.org/bin/windows/Rtools/rtools42/files/rtools42-5168-5107.exe'
+          $destination = '../rtools42.exe'
+          Invoke-WebRequest -Uri $source -OutFile $destination
+          Start-Process -FilePath ../rtools42.exe -ArgumentList /VERYSILENT -NoNewWindow -Wait
+        shell: powershell
       - uses: r-lib/actions/setup-pandoc@v1
 
       - name: Query dependencies
@@ -101,6 +94,8 @@ jobs:
 
       - name: Install cmdstan
         run: |
+          print(list.files("C:/rtools42"))
+          cmdstanr::check_cmdstan_toolchain(fix = TRUE)
           cmdstanr::install_cmdstan(cores = 2)
         shell: Rscript {0}
 

.github/workflows/Test-coverage.yaml

@@ -34,7 +34,7 @@ jobs:
         if: "!startsWith(github.ref, 'refs/tags/') && github.ref != 'refs/heads/master'"
       - uses: actions/checkout@v2
 
-      - uses: r-lib/actions/setup-r@v1
+      - uses: r-lib/actions/setup-r@v2
       - uses: r-lib/actions/setup-pandoc@v1
 
       - name: Install Ubuntu dependencies
@@ -67,6 +67,7 @@ jobs:
 
       - name: Install cmdstan
         run: |
+          cmdstanr::check_cmdstan_toolchain(fix = TRUE)
           cmdstanr::install_cmdstan(cores = 2)
         shell: Rscript {0}
 
@@ -84,24 +85,18 @@ jobs:
     steps:
       - uses: actions/checkout@v2
 
-      - name: Set path for RTools 4.0
-        if: runner.os == 'Windows'
-        run: echo "C:/rtools40/usr/bin;C:/rtools40/mingw64/bin" | Out-File -Append -FilePath $env:GITHUB_PATH -Encoding utf8
-
-      - name: Install mingw32-make and check toolchain path
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: 'release'
+      - name: Install Rtools42
         if: runner.os == 'Windows'
         run: |
-          pacman -Syu mingw-w64-x86_64-make --noconfirm
-          g++ --version
-          Get-Command g++ | Select-Object -ExpandProperty Definition
-          mingw32-make --version
-          Get-Command mingw32-make | Select-Object -ExpandProperty Definition
+          $source = 'https://cran.r-project.org/bin/windows/Rtools/rtools42/files/rtools42-5168-5107.exe'
+          $destination = '../rtools42.exe'
+          Invoke-WebRequest -Uri $source -OutFile $destination
+          Start-Process -FilePath ../rtools42.exe -ArgumentList /VERYSILENT -NoNewWindow -Wait
         shell: powershell
 
-      - uses: r-lib/actions/setup-r@v1
-        with:
-          r-version: 'release'
-
       - uses: r-lib/actions/setup-pandoc@v1
 
       - name: Query dependencies
@@ -114,6 +109,7 @@ jobs:
         run: |
           install.packages(c("remotes", "curl"), dependencies = TRUE)
           remotes::install_local(path = ".")
+          cmdstanr::check_cmdstan_toolchain(fix = TRUE)
           cmdstanr::install_cmdstan(cores = 2, overwrite = TRUE)
           remotes::install_deps(dependencies = TRUE)
           remotes::install_cran("covr")

.github/workflows/cmdstan-tarball-check.yaml

@@ -57,7 +57,14 @@ jobs:
       - uses: r-lib/actions/setup-r@v1
         with:
           r-version: ${{ matrix.config.r }}
-
+      - name: Install Rtools42
+        if: runner.os == 'Windows'
+        run: |
+          $source = 'https://cran.r-project.org/bin/windows/Rtools/rtools42/files/rtools42-5168-5107.exe'
+          $destination = '../rtools42.exe'
+          Invoke-WebRequest -Uri $source -OutFile $destination
+          Start-Process -FilePath ../rtools42.exe -ArgumentList /VERYSILENT -NoNewWindow -Wait
+        shell: powershell
       - uses: r-lib/actions/setup-pandoc@v1
 
       - name: Query dependencies
@@ -80,6 +87,7 @@ jobs:
           remotes::install_deps(dependencies = TRUE)
           remotes::install_cran("rcmdcheck")
           remotes::install_local(path = ".")
+          cmdstanr::check_cmdstan_toolchain(fix = TRUE)
           if (Sys.getenv("CMDSTAN_TEST_TARBALL_URL") == "latest") {
             cmdstanr::install_cmdstan(cores = 2, overwrite = TRUE)
           } else {

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: cmdstanr
 Title: R Interface to 'CmdStan'
-Version: 0.5.1.9000
-Date: 2022-04-06
+Version: 0.5.2
+Date: 2022-04-24
 Authors@R: 
     c(person(given = "Jonah", family = "Gabry", role = c("aut", "cre"),
            email = "[email protected]"),
@@ -36,7 +36,8 @@ Imports:
     jsonlite (>= 1.2.0),
     posterior (>= 1.1.0),
     processx (>= 3.5.0),
-    R6 (>= 2.4.0)
+    R6 (>= 2.4.0),
+    withr (>= 2.5.0)
 Suggests: 
     bayesplot,
     knitr (>= 1.37),

NEWS.md

@@ -1,3 +1,8 @@
+# cmdstanr 0.5.2
+
+* Refactored toolchain install and checks for R 4.x on Windows and added support
+for Rtools42.
+
 # cmdstanr 0.5.1
 
 * Temporarily disable `format="draws_rvars"` in the `$draws()` method due to a