LINDI

Project Structure

.
├── conf/                    # configuration files
├── docs/                    # Project documentation
├── slurm/                   # HPC job scheduling configs
├── src/                     # Python source code
├── pyproject.toml           # Python project config
└── taskfile.yaml            # Task automation definitions

Development Setup

Installing Task

Task is a task runner/build tool that aims to be simpler and easier to use than GNU Make. You'll need to install it before you can run any of the development tasks.

brew install go-task/tap/go-task

Environment

To set up the development environment, run:

task local:env

This command will install all necessary dependencies and configure your local development environment.

Note

task will install direnv which sets required environment variables automatically. You might want to hook it into your shell by following the setup guide. If you choose not to set up the hook, you'll need to prefix your commands with direnv exec . <command> to load the environment variables.