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  • I want to start off with the input file from EpiEstim and use it on the EpiEstim package.
  • I want to start off with the input file from EpiNow2 and use it on the EpiEstim package.
  • Convert EpiNow2 data to be compatible with EpiEstim tool.

Notes

  1. Start with a csv file.
  2. Extract the schema only and exclude other descriptors.
    # to YAML 
    frictionless describe file.csv --yaml --type schema
    # to JSON 
    frictionless describe file.csv --json --type schema
    
    Otherwise, you will also get name, type, path etc.
  3. The transform_by_schema.py module is used to transform the EpiNow2 data to EpiEstim data.

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Proof of concepts for Data Pipelines and Index

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