Last Updated 06/29/2025
This GitHub organization hosts code, presentations and other resources created by members of Memorial Sloan Kettering’s Department of Epidemiology & Biostatistics.
The repositories in this organization provide resources for implementing competing risks survival analyses (tidycmprsk) and analyzing genomic data (gnomeR) and patient-reported outcomes (PROscorerTools) in R, implementing decision curves in python (dcurves), as well as a set of SAS macros for common tasks such as creating a Table 1 (msk_SAS_macros).
| Package | CRAN Downloads (All-Time) | GitHub Stars | Last Updated | About |
|---|---|---|---|---|
| gnomeR | 26 | 10/15/2024 | Package to wrangle and visualize genomic data in R | |
| PROscorerTools | 29928 | 2 | 10/17/2023 | Tools to Score Patient-Reported Outcome (PRO) Measures and Other Psychometric Instruments |
| SvyNom | 42201 | 1 | 04/28/2022 | |
| tidycmprsk | 255337 | 25 | 08/17/2024 |
| Package | GitHub Stars | Last Updated | About |
|---|---|---|---|
| dcurves | 31 | 05/22/2025 | Python package for Andrew Vickers’ Decision Curve Analysis method to evaluate prediction models and diagnostic tests |
| Repository | GitHub Stars | Last Updated | About |
|---|---|---|---|
| create_msk_SAS_project | 0 | 10/19/2021 | Creates a directory with the essential files for a new project that will use SAS. |
| msk_SAS_macros | 1 | 10/19/2021 | SAS macros for MSK project use |
| Repository | GitHub Stars | Last Updated | About |
|---|---|---|---|
| contributing-to-an-R-pkg | 0 | 04/04/2022 | |
| introduction-to-msk-impact | 0 | 09/06/2022 | |
| Reproducibility-in-R-with-renv-and-templates | 3 | 05/13/2022 | |
| Writing-Functions-with-the-tidyverse | 4 | 11/01/2022 |
Please contact Jessica Lavery ([email protected]) and Daniel Sjoberg ([email protected]) if you are interested in creating a repository or transferring an existing repository to the organization.
