Segata Lab
The computational metagenomics lab at the Dep. CIBIO, University of Trento
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- inverse_var_weight Public
Object caller for stochastically dependent and independent effect-size and meta-analysis of correlations in Python
SegataLab/inverse_var_weight’s past year of commit activity - preprocessing Public
Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination
SegataLab/preprocessing’s past year of commit activity - CRC_staging_analysis Public
SegataLab/CRC_staging_analysis’s past year of commit activity - metaml Public
SegataLab/metaml’s past year of commit activity - diet_habits_microbiome_association Public
Repository with the command lines used to generate the microbiome meta-analyses and the microbiome machine learning in the vegetarian, vegan, omnivore diet comparison paper
SegataLab/diet_habits_microbiome_association’s past year of commit activity - lefse Public
SegataLab/lefse’s past year of commit activity - MASTER-WP5-pipelines Public
SegataLab/MASTER-WP5-pipelines’s past year of commit activity - panphlan Public
PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
SegataLab/panphlan’s past year of commit activity - metamlst Public
MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.
SegataLab/metamlst’s past year of commit activity
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