NTU BioMedical Systems Engineering Lab

All

26 repositories

ecme-rirr-dox
Public
Cardiomyocyte electrophysiology and bioenergetics model with doxorubicin perturbation
Julia
•
MIT License
•0•0•0•0•Updated Jun 4, 2025Jun 4, 2025
confocal_mito_analysis
Public
Python
•1•0•1•0•Updated Jun 3, 2025Jun 3, 2025
camkii-cardiomyocyte-model
Public
Neonatal rat cardiomyocyte model and CaMKII dynamics
Julia
•
MIT License
•0•0•0•0•Updated Jun 3, 2025Jun 3, 2025
jl-abm
Public
ABM examples in Julia
jupyter julia jupyter-notebook julia-language agent-based-modeling jupyter-book
MIT License
•0•3•0•0•Updated Jun 2, 2025Jun 2, 2025
mmsb-bebi-5009
Public
Mathematical Modeling for Systems Biology
computational-biology julialang jupyter-book julia
MIT License
•1•5•0•0•Updated Jun 2, 2025Jun 2, 2025
mitodyn-ode
Public
Code for mitochondrial dynamics ODE manuscript.
julia julialang ode-model mitochondria jupyter-book
Julia
•
MIT License
•0•2•0•0•Updated Apr 28, 2025Apr 28, 2025
ReportTex
Public template
A LaTeX template for reports. Supported by Tectonic/Github CI/makefile
TeX
•1•0•0•0•Updated Apr 21, 2025Apr 21, 2025
mmsb-bebi-5009-python
Public
Python notebooks for Mathematical modeling for Systems Biology
python computational-biology jupyter-book
MIT License
•0•0•0•0•Updated Mar 17, 2025Mar 17, 2025
Mitochondrial-Network-Model
Public
Mitochondrial Network Agent-based Model by Chu and Tseng
mitochondria python
Jupyter Notebook
•
MIT License
•0•1•0•0•Updated Mar 1, 2025Mar 1, 2025
APHRS2018-WenWei
Public archive
Source code for APHRS 2018 Taipei. Presenter: WenWei Tseng
Julia
•
MIT License
•0•0•0•0•Updated Jul 23, 2024Jul 23, 2024
mitochondria-retrograde-model
Public archive
Mitochondria Retrograde (RTG) Signalling model
julia ode-model mitochondria jupyter-book
Julia
•
MIT License
•0•2•1•2•Updated Jun 11, 2024Jun 11, 2024
mito-network-sharing
Public
Sharing of contents on mitochondrial encounter networks
C
•1•0•0•0•Updated May 2, 2024May 2, 2024
DenT_
Public
DenT paper revision
Python
•0•0•0•0•Updated May 2, 2024May 2, 2024
Unet_Mito
Public
Python
•1•0•0•0•Updated May 2, 2024May 2, 2024
ML-RNA-Seq
Public
Transcriptome and machine learning analysis of the impact of COVID-19 on mitochondria and multiorgan damage
Python
•
MIT License
•0•0•0•0•Updated Dec 19, 2023Dec 19, 2023
intro-github-vscode
Public
Lab introduction to Git, GitHub, and VS Code
Creative Commons Zero v1.0 Universal
•0•0•0•0•Updated Nov 9, 2023Nov 9, 2023
bulk_rnaseq
Public
A pipeline of analyzing bulk RNAseq data
R
•0•1•0•1•Updated Oct 2, 2023Oct 2, 2023
mmsb-metanet
Public archive
Metabolic network and flux balance analysis for Mathematical modeling of systems biology
MIT License
•0•0•1•0•Updated May 26, 2023May 26, 2023
rnaseq_rtg_expression
Public archive
Visualize retrograde signalling (RTG) protein expressions from RNAseq data
MIT License
•0•0•0•3•Updated Jan 23, 2023Jan 23, 2023
ecme-model-descriptor
Public archive
Model descriptors for ECME (Electrophiology-Contraction and Mitochondrial Energetics) model
TeX
•0•0•1•2•Updated Jan 17, 2023Jan 17, 2023
DenT
Public
Python
•0•0•0•0•Updated Sep 23, 2022Sep 23, 2022
cell-cycle-huang
Public
Cell cycle phases classification by Chi-Rong Huang
Jupyter Notebook
•0•0•0•0•Updated Sep 20, 2022Sep 20, 2022
RetroSignalModel.jl
Public archive
Original: https://github.com/stevengogogo/RetroSignalModel.jl
julia mitochondria
Julia
•
MIT License
•0•0•1•0•Updated May 1, 2022May 1, 2022
MitoRetroDynamics
Public archive
Source code for the article: "Mathematical Model for the Study of Mitochondrial Retrograde Signaling Dynamics"
Jupyter Notebook
•1•0•0•0•Updated Mar 21, 2022Mar 21, 2022
MitosisClassification
Public
Final project of Deep Medical Image Analysis
HTML
•1•0•0•0•Updated Dec 1, 2021Dec 1, 2021
tree-of-life
Public archive
bioinformatics phylogenetic-trees
MIT License
•0•0•0•0•Updated Sep 8, 2018Sep 8, 2018