Add logger to run script

[coni2k]

I tried to add "logger" to run script before but somehow I couldn't make it work. Now it turned out to be a very simple one 🤷‍♂️

I'm just not sure about moving "initialize_logging_handlers" function to a generic place.

It's very similar to the one in "generate" script:

run

def initialize_logging_handlers():
    logging.basicConfig(level=logging.INFO)
    logging.getLogger('').handlers.clear()

    console = logging.StreamHandler()
    console.setLevel(logging.INFO)
    logging.getLogger('').addHandler(console)

generate

def initialize_logging_handlers(output_dir):
    log_filename = os.path.join(output_dir, 'output.log')
    logging.basicConfig(filename=log_filename, filemode='w', level=logging.INFO)

    console = logging.StreamHandler()
    console.setLevel(logging.INFO)
    logging.getLogger('').addHandler(console)