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Merged
merged 1 commit into from
May 1, 2025
Merged

Include uml in documentation #642

merged 1 commit into from
May 1, 2025

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jan-janssen
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@jan-janssen jan-janssen commented May 1, 2025

Summary by CodeRabbit

  • Documentation
    • Ensured image assets from notebooks are now included in the documentation build and Binder environments.
    • Improved formatting and metadata structure in the developer notebook.
    • Added UML diagram references and images to the developer notebook for enhanced clarity.

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coderabbitai bot commented May 1, 2025

Walkthrough

This update modifies the documentation and build configuration to ensure that the notebooks/images directory is copied into the documentation and binder environments, making image assets available for notebook rendering. The .readthedocs.yml and binder/postBuild scripts are updated to copy this directory alongside the notebook files. Additionally, notebooks/4-developer.ipynb is reformatted: metadata is reorganized, markdown cells are adjusted to include UML diagram references, and code cell formatting is updated, but no changes are made to the code logic or outputs.

Changes

File(s) Change Summary
.readthedocs.yml, binder/postBuild Updated build scripts to copy the notebooks/images directory along with notebook files for documentation and binder builds.
notebooks/4-developer.ipynb Reformatted notebook: reorganized metadata, adjusted markdown formatting, added UML diagram/image references, updated code cell formatting without changing code logic.

Sequence Diagram(s)

sequenceDiagram
    participant User
    participant BuildScript
    participant DocsEnv

    User->>BuildScript: Trigger build (ReadTheDocs/Binder)
    BuildScript->>DocsEnv: Copy notebooks/*.ipynb to docs/
    BuildScript->>DocsEnv: Copy README.md to docs/
    BuildScript->>DocsEnv: Copy notebooks/images/ to docs/
    DocsEnv-->>User: Documentation build includes notebooks and images
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Possibly related PRs

  • Explain test environment #612: Both PRs modify the notebooks/4-developer.ipynb notebook primarily by restructuring metadata and formatting without changing the notebook's code logic or functionality.

Poem

In the docs a bunny hops with glee,
Copying images for all to see.
Notebooks polished, diagrams anew,
Metadata tidy, markdown too!
With every build, the assets flow—
A rabbit’s touch helps knowledge grow.
🐇✨


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Actionable comments posted: 0

🧹 Nitpick comments (1)
notebooks/4-developer.ipynb (1)

5-7: Consistent metadata restructuring and formatting
Your changes add explicit "id" and empty "metadata" fields to multiple markdown cells. These adjustments don’t alter execution but improve cell-level traceability. To avoid any schema drift, consider validating the notebook with a tool like nbformat (e.g., python -c "import nbformat; nbformat.read('4-developer.ipynb', as_version=4)") or running jupyter nbconvert --clear-output to ensure the JSON is both valid and clean.

Also applies to: 89-92, 101-103

📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL
Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between 6785d82 and 99deb3f.

⛔ Files ignored due to path filters (2)
  • notebooks/images/uml_executor.png is excluded by !**/*.png
  • notebooks/images/uml_spawner.png is excluded by !**/*.png
📒 Files selected for processing (3)
  • .readthedocs.yml (1 hunks)
  • binder/postBuild (1 hunks)
  • notebooks/4-developer.ipynb (3 hunks)
⏰ Context from checks skipped due to timeout of 90000ms (13)
  • GitHub Check: unittest_openmpi (ubuntu-latest, 3.13)
  • GitHub Check: unittest_openmpi (macos-latest, 3.13)
  • GitHub Check: unittest_mpich (ubuntu-latest, 3.11)
  • GitHub Check: unittest_win
  • GitHub Check: unittest_openmpi (ubuntu-latest, 3.12)
  • GitHub Check: unittest_openmpi (ubuntu-latest, 3.11)
  • GitHub Check: unittest_flux_openmpi
  • GitHub Check: unittest_mpich (macos-latest, 3.13)
  • GitHub Check: benchmark (ubuntu-latest, 3.13, .ci_support/environment-openmpi.yml)
  • GitHub Check: benchmark (ubuntu-latest, 3.13, .ci_support/environment-mpich.yml)
  • GitHub Check: notebooks
  • GitHub Check: notebooks_integration
  • GitHub Check: unittest_flux_mpich
🔇 Additional comments (4)
notebooks/4-developer.ipynb (1)

79-85: Verify UML diagram asset inclusion and correct paths
You’ve introduced two UML diagram references (uml_executor.png and uml_spawner.png) under images/. Please confirm that these files exist in notebooks/images/ and that your Binder and ReadTheDocs workflows correctly copy the entire images/ directory so the diagrams render as expected.

binder/postBuild (2)

10-10: Include the entire images directory
Moving notebooks/images into the working directory ensures UML assets accompany the notebooks in Binder. This is aligned with the documentation changes—good to go.


13-13: Sanity-check cleanup command
Your rm -rf removes the notebooks folder after moving files. Verify that this does not accidentally delete the relocated images/ directory. You might explicitly exclude images from the cleanup or list only known subdirectories to avoid surprises.

.readthedocs.yml (1)

19-19: Copy UML images into docs build
Adding - "cp -r notebooks/images docs" complements the notebook updates by ensuring image assets are present during the Sphinx build. Approved—just double-check your docs/conf.py static asset path settings to confirm they match.

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codecov bot commented May 1, 2025

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 96.83%. Comparing base (d019f5c) to head (99deb3f).
Report is 2 commits behind head on main.

Additional details and impacted files
@@           Coverage Diff           @@
##             main     #642   +/-   ##
=======================================
  Coverage   96.83%   96.83%           
=======================================
  Files          30       30           
  Lines        1294     1294           
=======================================
  Hits         1253     1253           
  Misses         41       41           

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@jan-janssen jan-janssen merged commit 58452ba into main May 1, 2025
112 of 122 checks passed
@jan-janssen jan-janssen deleted the uml branch May 1, 2025 14:29
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